یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران، اسفند ماه ۱۴۰۱

مقالات پذیرش شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران

• A Novel Approach for Identifying Cancer Drivers in Coding andNon-coding Genomic Elements

• Transcriptome-wide analysis of DNA-RNA hybrids reveals how non-coding RNAs contribute to ASDs

• Reconstruction of genome-scale metabolic model for Helicobacter pylori

• A bioinformatics approach to analysis UPR-related gens impact onAML

• Finding a genomic pattern for classifying breast cancer patients byRandom Forest and Linear Discriminant Analysis and cancer-specificbiomarkers by Integrative analysis of DNA methylation and geneexpression

• Candidate prognostic gene signatures in lung cancer risk amongasthmatic and COPD patients

• Identification of Transcription factors involved in cisplatin drugresistance in ovarian cancer by integrated analysis of transcriptomeand epigenomic data

• Purple Sulfur Oxidizing Bacteria: Model Reconstruction and FluxBalance Analysis

• Prediction of protein druggability by supervised learning approaches

• Feature set prioritization of metagenomes for predicting colorectalcancer based on multiple human gut microbiome datasets

• Antimicrobial resistance prediction in Acinetobacter baumannii using collaborative matrix factorization

• Improving prediction of drug-target interactions based on fusingmultiple features with data balancing and feature selection techniques

• Molecular design of sgRNA based on CRISPR-Cas۱۳a for specificdetection of ORF۱ab region in SARS-COV-۲ genome infecting Iranianpatients

• Characterization of chemotherapy resistant triple-negative breastcancers at single-cell resolution

• Comparative gene co-expression network analysis betweenadenocarcinoma and squamous cell carcinoma subtypes of esophagealcancer

• Single-cell RNA sequencing data analysis using Explainable ArtificialIntelligence identified key transcriptional factors for early COVID-۱۹severity prediction

• A Plastic-Contaminated Soil Gene Catalog Constructed byMetagenomic Approaches

• De novo Antibody design against PD-۱ and PDL-۱ as critical immunecheck points involve in cancer treatment

• Improvement of peptide-HLA class I prediction using transformers

• Molecular docking and ADME studies of natural compounds againstprime targets of HIV

• Investigation of Some Nanobodies against SARS-C۰V-۲ Spike protein by immune-bioinformatics tools

• Selection of the most effective SARS-C۰V-۲ proteins in order to design a recombinant vaccine by immune-bioinformatics tools

• Predicting Adverse Drug Reactions Using Computational Methods: An Analysis of Drug and Adverse Reaction Features and Representations

• Reconstruction of miRNA-mRNA regulatory network in the pediatric Adrenocortical Adenoma

• The role of circRNA-miRNA-mRNA interaction network in rheumatoid arthritis using transcriptome data analysis

• Investigating Eugenol-Lysozyme complex using docking and molecular dynamic simulation methods

• Evaluation of TUBB۳, PSMB۷, CBFB, and COL۹A۱ genes involved in the development of Squamous Cell Lung Cancer (SCC)

• Identification of the regulatory interactions related to gastric cancer via integrated bioinformatics analysis

• A Transformer based mutation prediction algorithm

• The Possible Role of Heat-shock proteins (HSPs) on InflammatoryBowel Disease (IBD): Peptide Motif Analysis as an Immunoinformatic Technique

• Differential Gene Expression in Rat Middle Cerebral Artery Occlusion Model

• Identification of key genes and signaling pathways involved in bovine tuberculosis challenged with Mycobacterium bovis: Comparison of RNA-Seq and microarray expression profiling data

• Comparative transcriptome analysis reveals significant di↵erentially expressed genes in bovine viral diarrhea virus (BVDV) infection

• Molecular Docking Analysis of gingerol compound of Zingiber o cinale Roscoe against Breast Cancer

• Using bioinformatics tools to identify pathogenic agents of Cutaneous Leishmaniasis

• A comparative structural study on two immobilized metagenomic α-amylases by molecular docking

• The role of Exome Sequencing analysis in the diagnosis of patients with rare neurogenetic disorders

• Computational identification of driver genes and pathways of chronic lung diseases

• Bioinformatics evaluation of CFEM gene region in some fungal species

• Comparison Of Milk Production Parameters In Different Environment Predicted By Non-Linear Model And Artificial Neural Network

• Haplotype Assembly Problem Models in Diploid and Polyploid Cases

• The impact of synthetic food colors on target proteins is suspected to have negative e↵ects on the human body, an in silico study

• Statistical physics approach in epilepsy disease

• Network Pharmacology Integrated With Experimental Validation andMolecular Docking Revealed the Anti-inflammatory Effects ofCoconut Oil

• Prediction of a G-Quadruplex Aptamer structure by mFold servers for identification histidine sequence-containing proteins

• Identification of differentially expressed genes in papillary thyroid cancer patients based on gender

• Effect of Salt Concentration on Structural Changes of Amyloid β

• Learning state machines on protein sequences

• FANCI/ hsa-miR-۳۰b-۳p /LINC۰۱۳۵۵ ceRNA axis can potentially promote Hepatocellular carcinoma by influencing DNA repair pathways

• In silico exploration of Neohesperidin inhibitory mechanism on TGFpathway and improving its bioavailability

• In silico study of IMPDH۲ interactions with proteins involved inWnt/ -catenin pathway

• TRHDE gene and its plausible role in multiple sclerosis

• Design of Potential Urease inhibitors via Pharmacophore and DockingBased Virtual Screening

• Integrated single-cell analysis of tumor-infiltrating immune cells reveals key secretory protein-coding genes of astrocytes in glioblastoma

• Reconstruction of miRNA-mRNA bipartite network in saliva of gastric cancer patients via bioinformatics analysis

• Application of bioinformatics in cancer diagnosis and prediction

• Identification of Candidate Genes Associated with Cisplatin Resistance in Ovarian Cancer

• In Silico Identification of Novel Natural Anti-Cancer Compounds Targeting ITGAV Protein

• Modeling guanylyl cyclase activating protein ۱ structure

• Genetic analysis of a missense mutation in the NANOS۲ gene involved in Non-Obstructive Azoospermia based on in-silico pathogenicity prediction tools

• Phytochemicals as natural anti-obesity agents: Molecular docking and computer-aided drug design

• An effcient convolutional neural network for diagnosis of Alzheimer’s disease

• Identification of key genes and regulatory mechanisms in Lupus nephritis pathogenesis

• Design and molecular docking studies of biuret derivatives as potentialMatrix Metalloproteinases ۹(MMP۹) inhibitors

• Machine Learning Algorithms Capable of Type ۲ Diabetes MellitusEarly Diagnosis using Explored Important Features

• Diagnosing MonkeyPox from Skin Indications using ArtificialIntelligence Method

• Identifying key modules and genes associated with Focal andSegmental Glomerulosclerosis Pathogenesis using an integrated WGCNA and PPI network analysis

• Bioinformatics-based secretome mining of four Meloidogyne species to recognize effective excretory/secretory proteins for plant pesticide targets

• Comparison of Sequence- Based Methods for sequence–structure alignment using the results of Picea abies L. genomics analysis

• Investigating The Second and Third Structure of Squalene Synthetase Transferase Gene in Dracocephalum kotschyi Plant

• Bioinformatic Investigation Of Protein Stability (SQS) In Prokaryotes and Eukaryotes

• Saccharum spontaneum transcriptome analysis for identification of the potential genes involved in receptor-mediated nonhost resistance

• Reconstruction of the Co-expression Network in Pediatric Low-grade Glioma

• Stoichiometric Metabolic Modelling of Nitrate Reducing Sulfur Oxidizing Bacteria for Wastewater Application

• The effect of Alzheimer’s drugs on carbonic anhydrase II and brain pH

• The Molecular Modeling of Vitamin E Arrangement on Fibrous Cellulose Superstructures

• Molecular docking investigation of vipirinin for colon cancer-related molecular target

• A comprehensive analysis of a pseudogene/lncRNA-miRNA-mRNA ceRNA network in esophageal cancer

• Identification of LPIN۱ and MTCO۱P۱۲ genes as gastric cancer-related potential biomarkers based on a ceRNA network

• Identification of Differentially Expressed Genes in Systemic Lupus Erythematosus Patients, Before and After Initiation of Immunosuppressive Therapy

• Association of miR-۳۹۱۶ expression with overall survival in breast cancer and identification key pathways and hub genes using bioinformatics analysis

• Supervised Kohonen networks as tools for virtual screening of PubChem database: A case study with cyclin dependent kinases

• Identification of ALB as a potential hypoxia-stemness-associated prognostic biomarker in gastric cancer

• A comparative meta-analysis and in silico analysis on metabolomics Profiles in Nephrotic Syndrome for Biomarker Discovery

• In silico evaluation of the interactions of CLOCK-BMAL۱ complex with IMPDH۲

• The effect of mating design on genetic gain and inbreeding

• The effect of genomic accuracy on interaction between genotype and environment

• Bioinformatic identification of miR-۴۶۴۵ hub target genes and experimental validation of the miR-۴۶۴۵ in breast cancer

• A survival-related competitive endogenous RNA (ceRNA) network of lncRNAs, miRNAs and mRNAs associated with gastric cancer

• Comprehensive bioinformatics analysis for Identification of PotentialCrucial Genes and Key Pathways in Early Diagnosis of GastricCancer: Helicobacter pylori (Follicular gastritis) Induced Chronic Gastritis with Increasing Risk of Gastric Cancer

• Breast milk DNA methylation-based potential prognostic biomarkers of triple-negative breast cancer

• Integrated bioinformatics analysis revealed that hub genes correlated with the prognosis and pathogenesis of gastric cancer

• The Application of Consensus Weighted Gene Co-expression NetworkAnalysis in Celiac Disease: Identification of Potential Protective Genes and Pathways

• Prediction of key responsive genes to environmental stresses in Thermus thermophilus by using SVM-RFE

• Identification key responsive genes to some environmental stresses in Thermus thermophilus by using computational biology approaches

• An analysis of bioinformatics on the antiviral activity and effectiveness of vitamins in treating monkeypox

• Power Domination Set-based Algorithm for Identification of KeyGenes in Lung Adenocarcinoma

• Integrated Bioinformatics Analysis For Differentially Expressed Genes,Micrornas And Pathways Identification In Age-Related Macular Degeneration

• In Silico Analysis of Novel VHL Germline Mutations in Iranian RCH Patients

• Computational Designing the Ligands of Protein L Affinity Chromatography Based on Molecular Dynamics Simulations

• Computational engineering of Protein L ligands to achieve an optimal a nity resin for purification of antibody fragments

• Prediction of interaction network of altered proteins, kinases and transcription factors, miRNAs, lncRNA in breast cancer disease

• Examining protein expression patterns in breast cancer compared to healthy group by bioinformatics

• Selection of antibacterial peptides against methicillin-resistant Staphylococcus aureus by bioinformatics and laboratory integration methods

• venom gland Transcriptome analysis of Iranian yellow scorpion,“Odontobuthus doriae” derived some putative antimicrobial peptide with anti-SARS-CoV-۲ effect

• Genomic analysis of the ASMT gene family in Cicer arietinum

• Investigating the pathway of resistance to Ciprofloxacin inCampylobacter jejuni by using microarray analysis

• Identification Of Hub Genes, microRNAs And Key Pathways Associated With Bladder Cancer

• Molecular dynamic simulation of Buforin IIb anticancer peptide with POPC-Cholesterol model membrane

• Examining the similarity of Hsp۹۰ sequence amongst different Aspergillus species

• A brief bioinformatic survey on Colletotrichum species complex

• Are Repetitive Motifs of LEAp Chaperones the Main Bodyguards ofTarget Proteins?: in silico Prediction

• Identification of sodium alendronate derivatives as purple acid phosphatase inhibitors and promising candidates for osteoporosis therapeutics: in silico studies

• Molecular Docking of DEP B enzyme with DON mycotoxin chemotype (۱۵ADON): In-silico analysis

• Molecular docking of rat myostatin with human follistatin: an in-silico analysis

• In silico Molecular Docking simulation of Antiviral Peptide Cathelicidin LL-۳۷ with Acyclovir

• Co-expression network analysis revealed ATP۶AP۱-DT, andTRIM۵۲-AS۱ as potential therapeutic lncRNAs in hepatocellular carcinoma

• Analysis of TPD۵۲ gene in prostate adenocarcinoma and probability analysis of rs۷۵۷۴۴۳۸۳۱ in hsa-mir-۳۳a-۵p

• Using Proteochemometrics models to predict interaction between isoforms of caspase and their inhibitors

• A mathematical model involving the effect of face masks in the control of COVID-۱۹

• Molecular dynamics (MD) simulation study on holo and apo forms of the ALS-linked hSOD۱ mutation

• Prediction of the Binding Site of Kryptofix-۲۲۱ to Na-dependent β-Galactosidase: A Molecular Docking study

• Phylogenetic study of L-asparaginase II (AsnB) in the bacteria domain and fungi kingdom

• Towards enhancing L-Asparaginase stability by computational-structural modeling

• In-silico emplacement of curcumin on higher-order assemblies of cellulose nanofibers

• Identifying Potential Inhibitory Ligands Against α۲ receptor

• A comprehensive bioinformatic evaluation the NTRK family as prognostic biomarkers in breast cancer

• Gene selection in classifying Alzheimer’s disease using a statistical, biological, and artificial intelligence-based pipeline

• Investigation miRNAs that might attenuate Diabetes and PolycysticOvary Syndrome: an In-silico study

• Genome expression profiling of the human brain affected by Mirtazapine through transcriptomics data analysis

• New Encoding Model Based on gRNA-DNA Pairs to Predict off-target Effects of Genome Editing with CRISPR/Cas۹

• Identification of key genes in non-functioning pituitary adenoma using gene expression profile and protein-protein interaction network

• Drug-Disease data integration for drug repurposing using deep neural networks

• Phylogenetic and structural analysis of native avian influenza subtype H۹N۲ hemagglutinin isolated

• A sequence and structure analysis on the Human Arc protein

• Identification of the Genes and Pathways in Glioblastoma cell lines by bioinformatics analysis

• Systems Biology Assessment and Transcriptome Analysis of the Interaction of Probiotic and Host in the Anti-Inflammatory Process

• Inhibition of competitive pathways to increase butanetriol production in the Escherichia coli through metabolic network simulation

• CCL۲۰ and CNTNAP۳C as prognostic biomarkers and therapeutic targets in HCT۱۱۶ cell lines treated with Fusobacterium nucleatum for colorectal cancer metastasis

• Phylogenetic analysis of amino acids in baculovirus enhancins

• In silico analysis of baculovirus enhancin genes

• Identification of Biomarkers Involved in Adrenocortical Carcinoma bySystems Biology Approach

• Investigate effects of plant secondary metabolites Compared with standard drugs on SARS-CoV-۲ by Molecular Docking and Molecular Dynamics

• The effect of L۸۱۳N|A۸۱۴R double mutations on Taq polymerase structure

• Identification of potential therapeutic microRNAs for gastric cancer based on bioinformatics analysis

• Preeclampsia: Ranking the genes and associated biological functions

• Enhancement of In-hospital Mortality Prediction in EmergencyDepartment using Ensemble Machine Learning Models

• Investigation effect of Pembrolizumab antibody combined withNapabucasin compared with Pembrolizumab on the gene expression profiling in colorectal cancer based whole transcriptome RNA-Seq analysis

• In-silico docking and virtual screening of natural products as possible BACE۱ inhibitors: a new hope for treatment of Alzheimer’s disease?

• Molecular screening and docking analysis of natural GSK۳B inhibitors: A promising target for Alzheimer’s disease

• Identification of hub genes and key signaling pathways of ascites-derived ovarian cancer stem cells from different origins and associated with clinicopathological features

• Study of the Gene Network effective on Bovine Mastitis underMicroarray data

• Evaluation of Protein Clusters in Wool Fiber Production Using Interaction Map Analysis

• Molecular docking and ADME studies of natural compounds against bitter taste receptors( TAS۲Rs )

• Cell Spatial Distribution Patterns of Human Distal Lung

• Unraveling the Complexity of rhizosphere microbiome affecting the quality of Crocus sativus