هفتمین همایش بیوانفورماتیک ایران، دی ماه ۱۳۹۶

مقالات پذیرش شده در هفتمین همایش بیوانفورماتیک ایران

• In silico analysis of genomic fingerprinting using highly repetitive sequences (HIPs, STRR and ERIC) to differentiate close cyanobacteria strains, isolated from different Climatic/Geographic Regions and Habitats

• In silico prediction of substrate specificity of adenylation domains of NRPSs genes of some cyanobacteria strains as a mining tool for natural bioactive compounds

• Evaluation of ensemble classifier (EC) machine learning methods for introduction of breast cancer genomic biomarkers

• The roll of computational methods in Traditional Chinese Medicine (TCM) with an approach to Traditional Iranian Medicine (TIM)

• Classification of proteins based on Difference of expression in healthy and cancerous tissue to identify biomarkers of prevalent cancers

• Quantitative Comparison of Abundance Structures of Generalized Communities

• Bioinformatics for Plant genome

• Gene Prioritization for Breast Cancer

• Big data analytics in bioinformatics

• The yief protein application and its performance improvement in bioremediation

• In silico evaluation and prediction of intra/inter-species relationships & properties of antigenic region 4 of HA protein of swine influenza H1N1 virus in Iran in order to present a proper candidate for vaccine

• In-silico evaluation of Iran NDV fusion protein in order to present effective vaccine candidate

• Analysis of Common Transcription Factors in SnRK2 Gene Family in Rice

• Promoter Analysis of SnRK2 Gene Family in Arabidopsis

• In silico analysis of the effective miRNAs regulating the rheumatoid arthritis

• In-silico evaluation of Human papioma virus L1 protein in order to present effective vaccine candidate

• Calculation and user-friendly reporting of anticipated amplicons from (un)specific primer-binding on bisulfite-treated genomes

• Potential of genomics for discovering addiction

• Stratification of breast cancer subtypes using somatic mutation and none negative matrix factorization

• Meta-Analysis Approach to the Estrogen Receptor-Alpha Gene PvuII (T/C) Polymorphism and Preeclampsia Risk

• Modelling a combined method based on SVM, NN and Boosted C5.0 decision tree for Hepatitis Disease Diagnosis

• Effect of KLK2 nsSNPs on prostate related disease

• Design of GST Target-Specific Primers for Polymerase Chain Reaction

• Chronic inflammation leads ASD children to Cancer

• Derivative free nonsmooth optimization algorithm for large data clustering

• Cancer Biomarker Discovery Using High Performance Algorithm

• In silico analysis of cis-acting regulatory elements in 5ʹ regulatory regions of Ca2+/cation antiporters gene family in Zea mays L

• Up-regulated specific MicroRNA-4640 in Brain Tumor Metastasis of Breast Cancer

• Investigating the difference in the gene expression profile of breast cancer metastasis to the brain with the lung, liver and bone tissues

• Clustering colon cancer patients based on their gene expression

• Large Scale Gene Expression Analysis towards Understanding the Crown Response to Cold Stress in Barley

• Large Scale Gene Expression Analysis towards Understanding the Roots Response to Drought Stress in Wheat

• Identification of Novel Members of miR166 family in Barley

• Novel Features Ranking Method for High Dimensional Biological Data

• In Silico comparison of Several Prokaryotic and Eukaryotic Signal Peptides for Secretory Production of Recombinant Human Endostatin in E. coli

• New Combining of SMOT and Tomek Links Sampling Methods for Functional Association Genes Prediction on Highly Imbalanced Data Sets

• Classification and prediction of therapeutic compositions of a number of plants

• The Role of Data Mining on Improving the Quality of Disease Treatment

• UNaProd 1.0: Universal Natural Product Resource

• Modeling polyclonality and mutation in Microbal Enhanced Oil Recovery

• Investigation of the expression of glycolysis, pentose phosphate and fatty acid biosynthesis genes in aerobic and anaerobic conditions in E. coli

• Influenza Bioinformatics Resources

• In-silico analysis of nucleic acid and amino acids (Env, Pol,Gag,Vif,Tat) of the HIV-1 virus (human immunodeficiency virus) for evaluating of the genetic evolutionary and signature pattern of Iran strains

• Sequencing the ovine pancreatic RNase A gene, a potent immunotoxin, in Iranian wild and domestic sheep

• In silico genome wide analysis of aquaporins in Musa acuminata

• Comparsion of Haplotype block stracture in Angus Bulls genotyped by 50k and 777k Bovine BeadChip

• Comparision of ROH detection in Angus breed genotyped by 50k and 777k Bovine Beadchip

• Estimation of effective population size (Ne) in Angus breed by 777K Bovine BeadChip

• Evolutionary pattern of the genus Salvia L.

• Prediction of subcellular localization of multi-location proteins in Arabidopsis thaliana using a probabilistic model integrating family-driven and protein-protein features

• Evolutionary study of PHOSPHOLIPID: DIACYLGLYCEROL ACYLTRANSFERASE (PDAT), an enzyme in neutral lipid biosynthesis between plants with high and low oil content

• Molecular dynamics simulation study of Protein- Nanoparticle Interactions

• Evaluation of the structure of catechole 2,3 deoxygenase in Aneurinibacillus migulanus strain Znu12 via bioinformatic studies

• Whole-Genome Based Molecular Phylogeny of Crimean-Congo Hemorrhagic Fever Virus for More Accurate Identification of the Virus Origin

• MiRProvide: a comprehensive database of predicted and validated microRNA-target interactions

• Investigation of phylogenetic, protein network and cis regulatory elements of TPRN: A key gene causing deafness, autosomal recessive 79

• In silico analysis of USH1C gene causing deafness autosomal recessive 18 and Usher syndrome type 1C

• Chemoselectivity of acetylene hydratase towards a few amines and alcohols

• Bioinformatic study on the structure of catechol 1,2 deoxygenase in Paenarthrobacter nitroguajacolicus strain Znu14

• Molecular docking study on the interaction of LU AF64280 and LU AF33241 with PDE2A

• In Silico Analysis of Non-Synonymous Single Nucleotid Polymorphisms (nsSNPs) in Human IL-6 Gene

• Analysis of Physicochemical Properties and Structure of Laccase

• Determination and Identification of Important and Influential Nodes Involved in the Pathology of Amyotrophic Lateral Sclerosis Using Improved TOPSIS Method

• Bioinformtic analysis of microbial phytase

• Bioinformatics analysis on the physicochemical properties and structure of bacterial chitinase enzyme

• Bioinformatic Analysis and Stability Assessment of Cold-adapted Xylanases

• Computational designing of poly-epitopic vaccine by Targeting E6 Protein Sequences

• Designing of Polyepitopic Vaccine by Targeting E7 Protein Sequences: An Immuno-Informatics Approach in Human Papillomavirus 16

• Important Nodes Detection in Biological Networks: A Graph Kernel based Approach

• Effect of Point Mutations in the Clostridium thermocellum Cellulase on the Thermostability: A Study by Molecular Dynamic Simulation

• In silico analysis of a new Brucella vaccine candidate

• Investigating the different environments of active site glutamates of Glyoxalase І

• Thr-101 and HOH-404 in proton exchange of glutathiohydroxyacetone by Glyoxalase І

• Investigation of interaction between two anti-diabetic drugs and human serum albumin, through molecular docking simulation

• In silico analysis of different signal peptides for secretory production of truncated keratinocyte growth factor in escherichia coli

• In silico Structure Analysis of Acinetobacter baumannii Outer Membrane Protein, BtuB, as a Potential vaccine candidate

• Investigation of the temperature-sensitive gating of TRPV2 channel by molecular dynamics simulation

• The role of α-Synuclein misfolding in Parkinson s disease

• Enhancing thermal stability of the Streptomyces chitinase enzyme using In Silico point mutation

• Protein Analysis of phosphate transporter (Tapt2) protein sequence in crop plant, Triticum aestivum

• Bioinformatics Study of Heat Shock Protein 90 (HSP90) among Animalia classes, Especially in Tardigrada (Ramazzottius varieornatus)

• Using an active learning semi-supervision algorithm for classifying of ECG signals and diagnosing heart diseases

• The K461Q mutation increases the thermo-stability of β-xylosidase: an in silico study

• Preference of dipeptides for adopting helix conformation

• The bioinformatical analysis Artemis defected protein in a subset of SCID patients

• In silico analysis of TREM2 gene involved in Alzheimer’s disease

• Molecular Docking of secondry metabolite in agrimonia as Acetylcholinesterase Inhibitors in Alzheimer s disease Treatment

• In Silico Epitope Mapping of Acinetobacter Baumannii Outer Membrane Protein, FilF, As a Potential Vaccine Candidate

• In Silico Structural Analysis of Acinetobacter Baumannii Outer Membrane Protein, FilF, As a Potential Vaccine Candidate

• Computational analysis of pathogenic mutation effects on human acyl-CoA dehydrogenase structure and stability

• Atomistic insights into the binding process in the column chromatography

• Atomistic insights into the Protein-functionalized nanoparticles

• Stability and affinity analysis of commercial anti-TNF-α antibodies: in-silico study

• An improved model of class C GPCR family member sweet taste receptor : construction and dynamics

• Bioinformatics study on the role of aromatic amino acids in the position of residue Leucine 25 in Aequorin with site-directed mutagenesis

• Investigating the effect of lysine 89 residue alteration using a site-directed mutagenesis on the structure and function of mnemiopsin 2 photoprotein via bioinformatics study

• Protein Sequence Analysis of Heat Shock Protein (HSP) protein sequence in medicinal plant,Capsicum annuum

• Predicting RNA Secondary Structures of ADC and ODC Genes Involved in Putrescin Biosynthesis in Fenugreek (Trigonella foenum-graceum L.)

• Anticipation of the secondary structure of nifs and CAP2 genes using Sfold, Mfold and RNAfold softwares in Fenugreek (Trigonellafoenum-graecum L.)

• Bioinformatic Study of miRNAs Involved in Wheat (Triticum aestivum) Vernalization

• Bioinformatic analysis of acyl carier protein (ACP) in eukaryotes and prokaryotes

• Structural modelling the of fatty acid ester in Rhizopogon luteolus Mushroom

• In silico analysis of mitochondrial tRNAlue(CUN) structure in the presence of A12308G polymorphism in patients with non-dystrophic myotonia

• In Silico Design, Analysis and Structure Prediction of Tow New Chimeras of VK210/VK247CSP Antigen for Development of a Malaria Pre-erythrocytic Subunit Vaccine Candidate

• Immunogenic epitopes prediction of SP15 protein of Phlebotomus papatasi salivary gland by bioimmunoinformatic

• ACon: predicting protein contact-map using additive neural networks and subgroups balancing method

• Assessing the stability of a drug-like inhibitory peptide in complex with β-Catenin using umbrella sampling

• Prediction the structure of the psbU protein using the method homology modeling

• PSSMFG: a bioinformatics tool for generating descriptors based on PSSM profiles

• Effect of Acetylation of Substance P on the Binding to NK1 Receptor by Molecular Dynamics Simulation

• Detection of Critical Genes Associated with Bovine Staphylococcus aureus (S. aureus) Subclinical Mastitis in Dairy Cattle

• Trade-off shapes diversity in eco-evolutionary dynamics

• Evaluation of 6 scoring systems in emergency department

• A Mutally information method for initialization of K2 alogorithms in Bayesian Gen Regularity Network

• Imputation of non-genotyped parents using genotype information of their relatives

• Statistical Analysis of Dihedral Angles Perturbation

• Analysis of a Hepatitis C Virus Infection Model with Interval Drug Effectiveness and Target Cells

• A hybrid evolutionary algorithm for multimodal functions with application to the drug therapy of cancer

• Breast Cancer Detection via Tree Algorithms

• Epilepsy Recognition Using Mixture Autoregressive with Two First Order autoregressive Components

• Assessment of population structure in cornelian cherry (Cornus mas L.) genotypes using bioinformatics STRUCTURE 2.3.4 software

• Introduction and investigation of the Top scoring pair method by detecting the efficiency of drug in breast cancer

• Differential Game Theory Approach in SIR Epidemic Model

• Investigation of the diffusion regime of Magnetospirillum gryphiswaldense

• Game theory approach in analyzing biological networks

• Reconstruction of intercellular signaling network in mouse immune system

• Identification and Validation of UGE1 Candidate Gene Associated to Drought Stress in Plants by Gene Expression Analysis

• Analysis of gene co-expression weighted network identifies specific module related to Parkinson

• Esophageal cancer: insight into protein network and identification of proteins related to this cancer using bioinformatics tools

• Network parameters to detect hubs and bottlenecks in the gene regulatory networks

• Mycophenolic acid treatment alters gene regulatory network of gastric cancer cell line AGS

• Detection of hub genes and protein complexes in gastric cancer cell line AGS exposed to mycophenolic acid by network-based analysis

• Bioinformatic analysis of cis acting elements and protein analysis of DREB6 gene in Triticum sativum

• Codon usage and protein analyses of UDP-Glycosyltransferase in the medicinal plant, Stevia (Stevia Rebaudiana)

• The comparision between Distance and character based methods in Phylogentic study

• The advantages and disadvantages of using three different kinds of character-based method in phylogenetic study

• An improved control strategy for gene regulatory networks using batch reinforcement learning

• The gut microbiome: when autism makes a connection to cancer!

• Assessment and extension of Interaction network of the salinity responsive genes in plants

• Personalized Cancer Driver Gene Identification, A Network Based Approach

• Sleep Apnea Detection from ECG Signal based on MLP-NN and GA

• In silico microRNA analysis binding to Tomato spotted wilt virus in tomato

• Functional and promoter analysis of conserved gene coexpression network of 4-Coumarate 3-hydroxylase in Brachypodium distachyon and Glycine max

• A novel algorithm to identification of breast cancer biomarkers

• Haplotype Assembly Using Rank Minimization

• Prediction and evaluation of driver genes based on TCGA somatic mutations data in breast invasive carcinoma patients

• Molecular mechanisms of mastitis susceptibility in dairy cattles

• Transcriptomic analysis for compactness of Sistan Yaghooti grape clusters

• How to analysis methylation sequencing data using DMRFusion

• The comparison of assembler using transcriptome data from Dracocephalum kotschyi Boiss

• Metagenome Assembly: Explanation, Challenges and Future Trends

• Study of Nucleotide Diversity and its Frequency in NPY Gene in Indigenous Turkeys of Iran

• Evaluation of quality-related parameters in raw NGS data and implementing tools to obtain them

• In Silico Analysis of DREB2 Transcription Factor Gene family in Aeluropus littoralis

• Sequences, molecular and protein structure bioinformatics analysis of the NGF gene in goats

• Heat shock protein 70 gene in Bos Taurus: Protein Network, Evolution and Molecular phylogenetic

• Exploring Genomic Traits of a Midgut Bacterial Symbiont of the Stinkbug Acrosternum arabicum (Hem., Pentatomidae)

• Haplotype Inference from Genotype Data Using Evolutionary Method (ARO)

• Discovery of novel Mycobacterial lasso peptide biosynthetic gene clusters and structure prediction of the resulting peptide

• Transcriptome Analysis in Medicinal Plant Leaves of Citrullus colocynthis to Identify the Genes Related to Production of Pharmaceutical Compounds

• Transcriptome Analysis of Male and Female Inflorescence of Medicinal Plant Citrullus Colocynthis to Identification the Effective Genes in Determination of Flower Sexuality

• A development framework for data analytics in genomics

• Approximation of knowledge-based potential function using b-splines in discrimination of native structure

• Genome-wide analysis of drought and salt involved responsiveness genes in Brassica napus

• Identification of Potential Factors to Enhance RPE Differentiation from ESC by Bioinformatics Analysis of Mesenchymal Cells

• A Network-Based Drug Repositioning Approach

• Computational Drug Repositioning: A Review on Databases and Approaches

• Reconstruction Of Intercellular Signaling Network: A Review On The Databases And Methods

• In silico prediction of preferred substrate of some HAD-Related Acid Phosphatase of A. thaliana

• Designing specific primer to replication partial sequence of the PgaA gene responsible for the synthesis of endo-polygalacturonase enzymes in Aspergillus niger

• Engineering of ovine pancreatic Ribonuclease for increasing of cytotoxicity activity: an in silico approach

• Step by Step from Machine Learning Algorithm to Making QSAR model: Present a Combined Feature Selection with a Case Study

• Protein design using native secondary sub-structures and solvent accessibility

• Designing and screening of a biomimetic peptide library to select blocking peptides interupting β-catenin/LRH-1 complex in pancreatic cancerous cells

• Feature Selection in Quantitative Structure-Activity Relationship (QSAR) Study: Combining Firefly and Neural Network methods

• Role of Glycosylation in Developing Anti-cancer Therapeutics

• Rational Design of a peptide aptamer targeting P53 tumor suppressor protein by Computational Methods

• Design and Synthesis of the Novel Coumarin-Quinoline Hybrids as Multitarget Inhibitors of the Acetylcholinesterase, Butyrylcholinesterase and Monoamine oxidase-B

• Molecular Dynamics Studies of Truncated Human Cathelicidin LL:37 Peptide Interacting with a Bacterial Model Membrane

• The study of characteristics of structural and functional of membrane antigens related to pulmonary malignancy, an Introduction to Diagnosis and Lung Cancer

• Drug Repurposing for Human HER2 Positive Breast Cancer based on Gene Co-expression Data

• Design, Molecular Dynamic Simulation and Docking of An Anti-angiogenic Peptide

• Hightroughput structure-based virtual screening to repropose new inhibitory compounds against FoxM1 transcription factor overexpressing in pancreatic cancerouse cell lines

• Molecular docking study on anticancer activity of phycocyanobilin

• Molecular Docking and structure-based Rivaroxaban novel analogs

• Molecular docking of glucosyltransferase enzyme (The most important factor in development of dental plaque) with Myrtus compounds

• In silico prediction of Anti-infective properties of therapeutic chemicals at Medicinal Plants

• CoMFA and CoMSIA 3D-QSAR and Molecular Docking Studies on Biaryl Benzamides derivatives as Histone Deacetylase 1 Selective Inhibitors

• Design and evaluation of new genetic structures capable of digesting carcinogenic aromatic hydrocarbons to develop strains of probiotics

• In silico analysis of the miR-200 family target genes as diagnostic biomarkers in prostate cancer

• In silico study the natural APC3 inhibitor

• Designing and molecular docking studies of deferasirox and its derivatives

• Drug Clusterng and Recommender System for Drug-Drug Interactions by Using Singular Value Decomposition

• A new antimalarial approach for designing an anticancer regiment by in silico methods: The iron chelating multitarget hybrid HPO drivatives

• STUDY ON THE EFFECT OF TWO NEW PHENOLIC COMPOUNDS ON THE ACTIVITY OF HUMAN SALIVARY ALPHA-AMYLASE

• In silico docking evaluation of α-Amylase inhibitory activity of N-(pyridine-2-ylcarbamothiol)benzamide

• Study of the interaction of Crizotinib with serum albumin protein by functional density theory method

• Molecular effects of Ganoderma lucidum: a bioinformatical approach

• Theoretical investigation of antimicrobial property of native histatin-3 and its four mutants via molecular Dynamics simulation method

• Theoretical investigation of antimicrobial property of native histatin-3 and four mutants of D1H, G23A, D1H+G23A and D1H+G9W via molecular Dynamics simulation method

• In Silico prediction of putative antimicrobial targets in Legionellaceae family: A homology based methods

• Categories protein secondary structure using soft computing(Combined with genetic fuzzy and neural network)

• The rational design of the new anti-alzheimer drugs via in-silico approach

• Insights into the inhibitory mechanism of rimantadine drug against p7 viroporin by molecular dynamic simulation

• In silico analysis of drug resistance in HIV-reverse transcriptase inhibitors

• Vision and Mission of Bioinformatics in Toxicology

• Alignment Independent 3D-QSAR Study of AT1 Inhibitors as Anti- hypertensive Drugs

• Simulation of para-substituted phenyl propionic acid derivatives interactions with GPR40 in the treatment of type 2 diabetes disease

• Calculation of amino acids propensity for secondary structures

• Evaluation of peripheral effects for gamma carboxylase effective in blood coagulation and relating proteins using QM/MM methods

• New Algorithm for Protein Catalytic Site Recognition, Based on Graph Matching

• Evaluation of bioinformatics characteristics of NPC1 protein (Niemann-Pick C1)

• Molecular modeling and dynamics simulation of a histidine-tagged TGFβ

• Finding genes involved in HA production a Systems Biology Approach

• Identification of unstable points in protein using analiysis prepheral of each residue

• CSFinder (Cleavage Site Finder): A Web-based Software for Identifying Potential Cleavage Site of Protein Based on 3D Structure

• Structural Analyses on aromatic-aromatic Interactions in Proteins

• Study of Red/ox Dynamics of Human Protein Disulfide Isomerase by Machine Learning and Network Analysis

• Protein Structure Reduction in Protein Fold Recognition

• A two layers hybrid approach for integration and first stage analysis of bioinformatics data based on hypergraph

• Notch pathway Gene Network in Colorectal Cancer Drug Treatment

• Regulatry Network in MKN-45 Cell Line in Response to Ibuprofen

• Differentation gene expression of Notch signaling pathway response to Ivermectin

• Identification of Transcription Factors in Gastric Cancer Cell Line Response to Ibuprofen

• Comparative coexpressed network study of phenylalanine ammonialyase in Brachypodium distachyon and Glycine max

• CBTH: a New Algorithm for MRTC Problem

• Investigating the effect of solvent type on the formation of Epaxal liposome (DOPC-DOPE) using coarse-grained molecular dynamics simulation

• Simulation Studied of Conjugated anti-Hepatitis B antibody to Streptavidin

• QSAR and Molecular Docking Studies on Phthalazinone Derivatives as H1 and H3 dual inhibitors: A New Approach to Treatment of Allergic Rhinitis

• Identification of important volatile organic compounds as cancer biomarkers

• Efficient Determination of Dead Markings of Petri Nets in Systems Biology

• Efficient Computation of Steady States of Logical Models of Biological Systems

• Association between Estrogen Receptor-Alpha Gene XbaI (A/G) polymorphisms and Preeclampsia Risk: A meta-analysis

• Application of Computational Systems Biology in Drug Discovery